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Institute for Sustainable Food Systems

Innovative solutions for a healthy and productive world

Institute for Sustainable Food Systems

Innovative solutions for a healthy and productive world

Read our most recent ISFS Annual Report or review the ISFS Brochure


2019 Publications (to date):

Adesogan, A. T., Havelaar, A. H., Mckune, S. L., Eilittä, M., & Dahl, G. E. (2019). Animal source foods: Sustainability problem or malnutrition and sustainability solution? Perspective matters. Global Food Security, 100325.
doi: 10.1016/j.gfs.2019.100325

Ahmad, S., Abbas, G., Ahmed, M., Fatima, Z., Anjum, M. A., Rasul, G., . . . Hoogenboom, G. (2019). Climate warming and management impact on the change of phenology of the rice-wheat cropping system in Punjab, Pakistan. Field Crops Research, 230, 46-61.

Alcalá-Briseño, R. I., Casarrubias-Castillo, K., López-Ley, D., Garrett, K. A., & Silva-Rosales, L. (2019). Network analysis of the papaya orchard virome from two agroecological regions of Chiapas, Mexico.
doi: 10.1101/708479

Anar, M. J., Lin, Z., Hoogenboom, G., Shelia, V., Batchelor, W. D., Teboh, J. M., . . . Khan, M. (2019). Modeling growth, development and yield of Sugarbeet using DSSAT. Agricultural Systems, 169, 58-70.

Anderson, J.L., Asche, F. and Garlock, T. (2019). Economics of Aquaculture Policy and Regulation. Annual Review of Resource Economics (in press).

Andersen, K., Buddenhagen, C., Rachkara, P., Gibson, R., Kalule, S., Phillips, D., and Garrett, K. (2019). Modeling Epidemics in Seed Systems to Guide Management Strategies: The Case of Sweetpotato in Northern Uganda.  Phytopathology (online 08/13/2019)

Asche, F. (2019) Innovations throughout the supply chain, Aquaculture Economics & management.

Asche, F., Misund, B., and Oglend, A. (2018). The Case and Cause of Salmon Price Volatility. Marine Resource Economics, 000-000.

Ascunce, M. S., Shin, K., Huguet-Tapia, J. C., Poudel, R., Garrett, K. A., Bruggen, A. H., & Goss, E. M. (2019). Penicillin Trunk Injection Affects Bacterial Community Structure in Citrus Trees. Microbial Ecology, 78(2), 457-469.

Asseng, S., and Asche, F. (2019). Future farms without farmers. Science Robotics, 4(27).

Asseng, S., Martre, P., Ewert, F., Dreccer. M.F., Beres, B., Reynolds, M., Braun, H., Langridge, R., Le Gouis, J., Salse, J., and Baenziger, P.S. (2019). Model-Driven Multidisciplinary Global Research to Meet Future Needs: The Case for “Improving Radiation Use Efficiency to Increase Yield”. Crop Sci. 59:843-849.

Asseng, S., Martre P, Maiorano A, et al. Climate change impact and adaptation for wheat protein. Glob Change Biol. 2019;25:155–173.

Bell, T. H., Hockett, K. L., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., . . . Yergeau, E. (2019). Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities. Phytobiomes Journal, 3(1), 3-21.  (Garrett)

Bennett, A. E., Preedy, K., Golubski, A., Umbanhowar, J., Borrett, S. R., Byrne, L., Apostol, K., Bever, J. D., Biederman, L., Classen, A. T., Cuddington, K., Graaff, M.‐A., Garrett, K. A., Gross, L., Hastings, A., Hoeksema, J. D., Hrynkiv, V., Karst, J., Kummel, M., Lee, C. T., Liang, C., Liao, W., Mack, K., Miller, L., Ownley, B., Rojas, C., Simms, E. L., Walsh, V. K., Warren, M., and Zhu, J.. 2019. Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere 10(7):e02799.

Boughton, E. H., Quintana‐Ascencio, P. F., Jenkins, D. G., Bohlen, P. J., Fauth, J. E., Engel, A., Shukla, S., Kiker, G., Hendricks, G., and Swain, H. M. 2019. Trade‐offs and synergies in a payment‐for‐ecosystem services program on ranchlands in the Everglades headwaters. Ecosphere 10( 5):e02728.

Cai, Y., Guan, K., Lobell, D., Potgieter, A. B., Wang, S., Peng, J., Xu, T., Asseng, S., Zhang, Y., You, L., and Peng, B. (2019). Integrating satellite and climate data to predict wheat yield in Australia using machine learning approaches. Agricultural and Forest Meteorology, 274, 144-159.

Carvajal-Yepes, M., Cardwell, K., Nelson, A., Garrett, K. A., Giovani, B., Saunders, D. G., . . . Tohme, J. (2019). A global surveillance system for crop diseases. Science Vol. 364, Issue 6447 pp 1237-1239.
doi: 10.1126/science.aaw1572

Choudhury, R. A., Er, H. L., Hughes, M., Smith, J. A., Pruett, G. E., Konkol, J., Ploetz, R.C., Marios, K.A., Garrett, K.A., and Bruggen, A. H. (2019). Host density dependence and environmental factors affecting laurel wilt invasion.

Cohen, A. A., Cohen, P. R., and Kiker, G. (2019). Modeling Gender Inequity in Household Decision-Making. Social, Cultural, and Behavioral Modeling Lecture Notes in Computer Science, 31-38.

Cojocaru, A. L., Asche, F., Pincinato, R. B., and Straume, H. (2019). Where Are the Fish Landed? An Analysis of Landing Plants in Norway. Land Economics, 95 (2), 246-257.

Cui, J., Shao, G., Lu, J., Keabetswe, L, and Hoogenboom, G. (2020). Yield, quality and drought sensitivity of tomato to water deficit during different growth stages. Scientia Agricola, 77(2), e20180390. Epub September 02, 2019.

Dutka‐Gianelli, J, Crandall, C, Garlock, T, Camp, E, Lorenzen, K. Effects of short educational workshops on stakeholder knowledge and attitudes on coastal fish stocking programmes. Fish Manag Ecol. 2019; 26: 306– 309.

Fayette, J., Bec, S., Loubeau, S., Fulton, J., Garrett, K., & Harmon, C. L. (2019). First report of Lasiodiplodia hormozganensis causing fruit rot of eggplant in Haiti. Plant Disease.
doi: 10.1094/pdis-05-19-1093-pdn

Garlock, T., Asche, F., Anderson, J., Bjørndal, T., Kumar, G., Lorenzen, K., … Tveterås, R. (2019). A Global Blue Revolution: Aquaculture Growth Across Regions, Species, and Countries. Reviews in Fisheries Science & Aquaculture, 1–10.
doi: 10.1080/23308249.2019.1678111

Garlock, T., Camp, E., and Lorenzen, K. (2019). Efficacy of largemouth bass stock enhancement in achieving fishery management objectives in Florida. Fisheries Research, 213, 180-189.

Gibb, H. J., Barchowsky, A., Bellinger, D., Bolger, P. M., Carrington, C., Havelaar, A. H., . . . Devleesschauwer, B. (2019). Estimates of the 2015 global and regional disease burden from four foodborne metals – arsenic, cadmium, lead and methylmercury. Environmental Research, 174, 188-194.

Guarin, J. R., Emberson, L., Simpson, D., Hernandez-Ochoa, I. M., Rowland, D., and Asseng, S. (2019). Impacts of tropospheric ozone and climate change on Mexico wheat production. Climatic Change.

Guarin, J. R., Kassie, B., Mashaheet, A. M., Burkey, K., and Asseng, S. (2019). Modeling the effects of tropospheric ozone on wheat growth and yield. European Journal of Agronomy, 105, 13-23.

Guillen, J., Asche, F., Carvalho, N., Polanco, J. M., Llorente, I., Nielsen, R., . . . Villasante, S. (2019). Aquaculture subsidies in the European Union: Evolution, impact and future potential for growth. Marine Policy, 104, 19-28.

Hamdi, L., Suleiman, A., Hoogenboom, G., & Shelia, V. (2019). Response of the Durum Wheat Cultivar Um Qais (Triticum turgidum subsp. durum) to Salinity. Agriculture, 9(7), 135.

Havelaar, A., Grace, D. and Wu, F. 2019. Foodborne diseases from dairy products in developing countries: Hazards and health implications. Presentation at the 2019 annual meeting of the American Dairy Science Association, Cincinnati, Ohio, 23–26 June 2019. Gainesville, Florida (USA): University of Florida.

Hernandez-Ochoa, I. M., Pequeno, D. N., Reynolds, M., Babar, M. A., Sonder, K., Milan, A. M., . . . Asseng, S. (2019). Adapting irrigated and rainfed wheat to climate change in semi-arid environments: Management, breeding options and land use change. European Journal of Agronomy, 125915.

Jha, P. K., Athanasiadis, P., Gualdi, S., Trabucco, A., Mereu, V., Shelia, V., and Hoogenboom, G. (2019). Using daily data from seasonal forecasts in dynamic crop models for yield prediction: A case study for rice in Nepal’s Terai. Agricultural and Forest Meteorology, 265, 349-358.

Kiker, G. and Scogings, P. F. (2019). Savanna Ecosystem Models. In Savanna Woody Plants and Large Herbivores (eds P. F. Scogings and M. Sankaran).

Kropp, I., Nejadhashemi, A. P., Deb, K., Abouali, M., Roy, P. C., Adhikari, U., and Hoogenboom, G. (2019). A multi-objective approach to water and nutrient efficiency for sustainable agricultural intensification. Agricultural Systems, 173, 289-302.

Li, M., Havelaar, A. H., Hoffmann, S., Hald, T., Kirk, M. D., Torgerson, P. R., and Devleesschauwer, B. (2019). Global disease burden of pathogens in animal source foods, 2010. Plos One, 14(6).

Liu, B, Martre, P, Ewert, F, … Asseng, S. (2019) Global wheat production with 1.5 and 2.0°C above pre‐industrial warming. Glob Change Biol.25: 1428– 1444.

Mayes, M., Melillo, J., Neill, C., Palm, C., Mustard, J., & Nyadzi, G. (2019). Nitrogen cycle patterns during forest regrowth in an African Miombo Woodland landscape. Journal of Geophysical Research: Biogeosciences.

McCluney, J. K., Anderson, C. M., and Anderson, J. L. (2019). The fishery performance indicators for global tuna fisheries. Nature Communications, 10(1).

Ogero, K. O., Kreuze, J. F., Mcewan, M. A., Luambano, N. D., Bachwenkizi, H., Garrett, K., . . . Vlugt, R. V. (2019). Efficiency of Insect-proof Net Tunnels in Reducing Virus-related Seed Degeneration in Sweetpotato. Plant Pathology 68.

Paff, K., and Asseng, S. (2019). Comparing the effects of growing conditions on simulated Ethiopian tef and wheat yields. Agricultural and Forest Meteorology, 266-267, 208-220.

Perz S.G. et al. (2019) Scientists and Stakeholders, Data and Diagnostics: Crossing Boundaries for Modeling the Impacts of Highway Paving in a Tri-national Frontier in the Amazon. In: Perz S. (eds) Collaboration Across Boundaries for Social-Ecological Systems Science. Palgrave Macmillan, Cham  (Gregory Kiker)

Phoncharoen, P., Banterng, P., Vorasoot, N., Jogloy, S., Theerakulpisut, P., and Hoogenboom, G. (2019). The Impact of Seasonal Environments in a Tropical Savanna Climate on Forking, Leaf Area Index, and Biomass of Cassava Genotypes. Agronomy 9(1):19.
doi: 10.3390/agronomy9010019

Phoncharoen, P., Banterng, P., Vorasoot, N., Jogloy, S., Theerakulpisut, P., and Hoogenboom, G. (2019). Growth rates and yields of cassava at different planting dates in a tropical savanna climate. Scientia Agricola, 76(5), 376-388.

Poudel, R., Jumpponen, A., Kennelly, M.M., Rivard, C.L., Gomez-Montano, L., and Garrett, K.A. 2019. Rootstocks shape the rhizobiome: rhizosphere and endosphere bacterial communities in the grafted tomato system. Appl Environ Microbiol 85:e01765-18.

Quiñones, A. J., Keller, M., Gutierrez, M. R., Khot, L., and Hoogenboom, G. (2019). Comparison between grapevine tissue temperature and air temperature. Scientia Horticulturae, 247, 407-420.

Resenes, J. D., Pavan, W., Hölbig, C. A., Fernandes, J. M., Shelia, V., Porter, C., and Hoogenboom, G. (2019). JDSSAT: A JavaScript Module for DSSAT-CSM integration. SoftwareX, 10, 100271.

Richetti, J., Boote, K. J., Hoogenboom, G., Judge, J., Johann, J. A., and Uribe-Opazo, M. A. (2019). Remotely sensed vegetation index and LAI for parameter determination of the CSM-CROPGRO-Soybean model when in situ data are not available. International Journal of Applied Earth Observation and Geoinformation, 79, 110-115.

Santos Miquéias G., Boote K.J., Faria Rogério T., and Hoogenboom G. (2019) Simulation of productivity and soil moisture under Marandu palisade grass using the CSM-CROPGRO-Perennial Forage model. Crop and Pasture Science 70, 159-168.

Sawatraksa, N., Banterng, P., Jogloy, S., Vorasoot, N., and Hoogenboom, G. (2019). Cassava Growth Analysis of Production during the Off-Season of Paddy Rice. Crop Science, 0(0), 0.

Shamshak, G.L., Anderson, J.L., Asche, F., Garlock, T., and Love, D.C. (2019). U.S. seafood consumption. Journal of the World Aquaculture Society. (currently early online version available).

Shelia, V., Hansen, J., Sharda, V., Porter, C., Aggarwal, P., Wilkerson, C. J., and Hoogenboom, G. (2019). A multi-scale and multi-model gridded framework for forecasting crop production, risk analysis, and climate change impact studies. Environmental Modelling & Software, 115, 144-154.

Siad, S. M., Iacobellis, V., Zdruli, P., Gioia, A., Stavi, I., and Hoogenboom, G. (2019). A review of coupled hydrologic and crop growth models. Agricultural Water Management, 224, 105746.

Sogn-Grundvåg, G., Asche, F., Zhang, D., & Young, J. A. (2019). Eco-labels and product longevity: The case of whitefish in UK grocery retailing. Food Policy, 101750.
doi: 10.1016/j.foodpol.2019.101750

Sprunger, C. D., Culman, S. W., Palm, C. A., Thuita, M., & Vanlauwe, B. (2019). Long-term application of low C:N residues enhances maize yield and soil nutrient pools across Kenya. Nutrient Cycling in Agroecosystems, 114(3), 261-276.

Tlusty, M. F., Tyedmers, P., Bailey, M., Ziegler, F., Henriksson, P. J., Béné, C., Bush, S., Newton, R. Asche, F., Little, D.C., Troell, M., and Jonell, M. (2019). Reframing the sustainable seafood narrative. Global Environmental Change, 59, 101991.
doi: 10.1016/j.gloenvcha.2019.101991

Torabi, B., Archontoulis, S. V., and Hoogenboom, G. (2019). A New Function for Prediction of Biological Processes Response to Temperature. International Journal of Plant Production.

Ullah, A., Ahmad, I., Ahmad, A. et al. (2019). Assessing climate change impacts on pearl millet under arid and semi-arid environments using CSM-CERES-Millet model. Environ Sci Pollut Res 26: 6745. (Hoogenboom)

Ullah, A., Ahmad, A., Khaliq, T., Akhtar, J., and Hoogenboom, G. (2019). Path analysis approach to assess the compensatory impact of yield attributes on pearl millet grain yield in semi-arid and arid areas of Punjab, Pakistan. Journal of Animal and Plant Sciences. 29. 746-753.
ISSN: 1018-7081

Ullah, A., Ahmad, I., Rahman, M., Ahmad, A., Mahmood, A, and Hoogenboom, G. (2019). Climate Smart Interventions of Small-Holder Farming Systems In: Climate Change and Agriculture, IntechOpen, UK, pp. 1-15.

Van Bruggen, A. H. C., Goss, E. M., Havelaar, A., Diepeningen, A. D., Finckh, M. R., and Morris, J. G. (2019). One Health - Cycling of diverse microbial communities as a connecting force for soil, plant, animal, human and ecosystem health. Science of the Total Environment, 664, 927-937.

Van Keulen H. and Asseng S. (2019) Simulation Models as Tools for Crop Management. In: Savin R., Slafer G. (eds) Crop Science. Encyclopedia of Sustainability Science and Technology Series. Springer, New York, NY

Vanli, Ö, Ustundag, B. B., Ahmad, I., Hernandez-Ochoa, I. M., and Hoogenboom, G. (2019). Using crop modeling to evaluate the impacts of climate change on wheat in southeastern turkey. Environmental Science and Pollution Research.

Weihe, R., Rørvik, K., Thomassen, M. S., & Asche, F. (2019). A model system to evaluate the economic performance of two different dietary feeding strategies in farmed Atlantic salmon (Salmo salar L.). Aquaculture, 734335.

Yazd, H. G., Salehnia, N., Kolsoumi, S., and Hoogenboom, G. (2019). Prediction of climate variables by comparing the knearest neighbor method and MIROC5 outputs in an arid environment. Climate Research, 77(2), 99-114. doi:10.3354/cr01545

Zhao, C., Liu, B., Xiao, L., Hoogenboom, G., Boote, K.J., Kassie, B.T., Pavan, W., Shelia, V., Kim, K.S., Hernandez-Ochoa, I.M., Wallach, D., Porter, C.H., Stockle, C.O., Zhu, Y., and Asseng, S. (2019). A SIMPLE crop model. European Journal of Agronomy, 104: 97-106.

2018 Publications: See ISFS 2018 Annual Report

2017 Publications: See ISFS 2017 Annual Report

2016 Publications:

Ahmed, M., Akram, M.N.,  Asim, M., Aslam, M., Hassan, F., Higgins, S., Stöckle, C.O. & Hoogenboom, G. (2016). Calibration and validation of APSIM-Wheat and CERES-Wheat for spring wheat under rainfed conditions: models evaluation and application. Computers and Electronics in Agriculture, 123(1), 384-401. doi: 10.1016/j.compag.2016.03.015

Allard, J., P. Vincent, J.R. McElwaney, & Hoogenboom, G. (2016). A comparison of temperature data from automated and manual observing networks in Georgia and impacts of siting characteristics. Journal of Atmospheric and Oceanic Technology 33(7), 1473-1494. doi: 10.1175/JTECH-D-15-0161.1

Anderson, J. L. (Oct. 10, 2016). Global shrimp production survey: GOAL 2016 – production could reach 4.44 MMT by 2018. Global Aquaculture Alliance

Anderson, J. L., Valderrama, D. & Jory, D. (Jan. 4, 2016). “GOAL shrimp production survey: recovery coming. Global Aquaculture Alliance

Asche, F., Roll, K. H., & Tveteras, R. (2016) Profiting from agglomeration? Evidence from the salmon aquaculture industry. Regional Studies. 50(10), 1742-1754. doi: 10.1080/00343404.2015.1055460

Asche, F., Misund, B. & & Oglend, A. (2016). Determinants of the Atlantic salmon future risk premium. Journal of Commodity Markets, 2(1), 6-17. doi: 10.1016/j.jcomm.2016.07.001

Asche, F., Misund, B. & Oglend, A. (2016). The spot-forward relationship in the Atlantic salmon market. Aquaculture Economics and Management, 20(2), 222-234. doi: 10.1080/13657305.2016.1156192

Asche, F., & Oglend, A. (2016). The Relationship between input-factor and output prices in commodity industries: the case of Norwegian salmon aquaculture. Journal of Commodity Markets, 1(1), 35-47. doi: 10.1016/j.jcomm.2015.11.001

Aspinall, W. P., Cooke, R. M., Havelaar, A. H., Hoffmann, S., & Hald, T. (2016). Evaluation of a performance-based expert elicitation: WHO global attribution of foodborne diseases. PLoS ONE 11(3), e0149817. doi: 10.1371/journal.pone.0149817 

Badr, G., Klein, L.J., Freitag, M., Albrech, C. M., Marianno, F. J., Lu, S., Shao, X., Hinds, N., Hoogenboom, G., & Hamann, H. F. (2016). Toward large-scale crop production forecasts for global food security. IBM Research & Development 60(5/6), 5-1 – 5:11. doi: 10.1147/JRD.2016.2591698

Barrett, C. B., & Palm, C. A. (2016). Meeting the global food security challenge: obstacles and opportunities ahead. Global Food Security 11, 1-4. doi: 10.1016/j.gfs.2016.11.001

Bronnmann, J. & Asche, F. (2016). The values of product attributes, brands and private labels: an analysis of frozen seafood in Germany. Journal of Agricultural Economics, 67(1), 231-244. doi: 10.1111/1477-9552.12138

Cassini, A., Hathaway, S., Havelaar, A., Koopmans, M., Koutsoumanis, K., Messens, W., Muller-Seitz, G., Nørrung, B., Rizzi, V. & Scheutz, F. (2016). Microbiological risk assessment. EFSA Journal 14(S1), s0507. doi: 10.2903/j.efsa.2016.s0507

Dokoohaki, H., Gheysari, M., Mousavi, S. F., Zand-Parsa, S., Miguez, F. E., Archontoulis, S. V., & Hoogenboom, G. (2016). Coupling and testing a new soil water module in DSSAT CERES-Maize model for maize production under semi-arid condition. Agricultural Water Management 163(1), 90-99. doi: 10.1016/j.agwat.2015.09.002

Dendy, S. P., Tong, B., Alexander H. A., Fay, P. A., Murray, L., Xing, Y. & Garrett, K. A. (2017). A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology. Accepted Author Manuscript. doi: 10.1111/ppa.12678

Faria, de R. T., Casão Jr., R., Werner, S. S., Zanão Jr., L. A., & Hoogenboom, G. (2016). Soybean yield in relation to distance from the Itaipu reservoir. International Journal of Biometeorology 60(7), 1015-1028. doi: 10.1007/s00484-015-1093-8

Fleisher, D. H., Condori, B., Quiroz, R., Alva, A., Asseng, S., Barreda, C., Bindi, M., Boote, K. J., Ferrise, R.,  Franke, A. C., Govindakrishnan, P. M., Harahagazwe, D., Hoogenboom, G., Naresh Kumar, S., Merante, P., Nendel, C.,  Olesen, J. E., Parker, P. S., Raes, D., Raymundo, R., Ruane, A. C., Stockle, C., Supit, I., Vanuytrecht, E., Wolf, J., & Woli, P. (2016). A potato model inter-comparison across varying climates and productivity levels. Global Change Biology. Accepted for publication. doi: 10.1111/gcb.13411

Franssen F., Swart, A., van der Giessen, J., Havelaar, A. & Takumi, K. (2017). Parasite to patient: a quantitative risk model for Trichinella spp. in pork and wild boar meat. Int J Food Microbiol. 241, 262-275. doi: 10.1016/j.ijfoodmicro.2016.10.029.

Gibb, H., Devleesschauwer, B., Bolger, P. M., Wu, F., Ezendam, J., Cliff, J., Zeilmaker, M., Verger, P., Pitt, J., Baines, J., Adegoke, G., Afshari, R., Liu, Y., Bokkers, B., Van Loveren, H., Mengelers, M., Brandon, E., Havelaar, A. H., & Bellinger, D. C. (2016). Asian implications of Aflatoxin and Dioxin foodborne chemical exposures based on World Health Organization estimates. Asia Pacific J Med Tox, 4, 130-132. doi: 10.12688/f1000research.7340.1

Garrett, K. A., Frank, E. E., Dendy, S. P., Leslie, J. F., & Saleh, A. (2016). Microbiome engineers: grazers, browsers, and the phytobiome stampede. bioRxiv, 087494. doi: 10.1101/087494.

Hald, T., Aspinall, W., Devleesschauwer, B., Cooke, R., Corrigan, T., Havelaar, A. H., Gibb, H., Torgerson, P. R., Kirk, M. D., Angulo, F. J., Lake, R. J., Speybroeck, N., & Hoffmann, S. (2016). World Health Organization estimates of the relative contributions of food to the burden of disease due to selected foodborne hazards: a structured expert elicitation. PLOS One, 11, e0145839. doi: 10.1371/ journal.pone.0145839.

Han, Y., Chu, J. & Anderson, J. L. (Aug. 12, 2016). Survey: food safety becoming Chinese consumers’ top priority. Global Aquaculture Alliance.

Havelaar, A. H., & Swart, A. (2016). Impact of waning acquired immunity and asymptomatic infections on case-control studies for enteric pathogens. Epidemics, 17: 56-63. doi: 10.1016/j.epidem.2016.11.004.

Hondrade, R. F., Hondrade, E., Zheng, L., Elazegui, F., Duque, J., Mundt, C. C., Vera Cruz, C. M., & Garrett, K. A. (2017). Cropping system diversification for food production in Mindanao rubber plantations: A rice cultivar mixture and rice intercropped with mungbean. PeerJ 5, e2975 doi: 10.7717/peerj.2975

Jing, Q., Shang, J., Qian, B., Hoogenboom, G., Huffman, T., Liu, J., Ma, B., Geng, X., Jiao, X., Kovacs, J., & Walters, D. (2016). Evaluation of the CSM-CROPGRO-Canola model for simulating canola growth and yield at West Nipissing in eastern Canada. Agronomy Journal, 108(2): 575-584. doi: 10.2134/agronj2015.0401

Kanter, D. R., Musumba, M., Wood, S. L. R., Palm, C., Antle, J., Balvanera, P., Dale, V. H., Havlik, P., Kline, K. L., Scholes, R. J., Thornton, P., Tittonell, P., & Andelman, S. (2016). Evaluating agricultural trade-offs in the age of sustainable development. Agricultural Systems. doi: 10.1016/j.agsy.2016.09.010

Kiani, M., Gheysari, M., Mostafazadeh-Fard, B., Majidi, M. M., Karchani, K., & Hoogenboom, G. (2016). Effect of the interaction of water and nitrogen on sunflower under drip irrigation in an arid region. Agricultural Water Management, 171(1): 162-172. doi: 10.1016/j.agwat.2016.04.008

Kuehne A., Bouwknegt, M., Havelaar, A., Gilsdorf, A., Hoyer, P., Stark, K., Werber, D. & the HUS active surveillance network Germany (2016). Estimating true incidence of O157 and non-O157 Shiga toxin-producing Escherichia coli illness in Germany based on notification data of haemolytic uraemic syndrome. Epidemiol Infect., 144(15), 3305-3315. doi:  10.1017/S0950268816001436

Kumbhakar, S. C., Asche, F., Roll, K., & Tveteras, R. (2016). A general error revenue function model with technical inefficiency: an application to Norwegian fishing trawlers. In Productivity and Efficiency Analysis (ed. W. Greene, L. Khalaf, R. Sickles, M. Veall, M-C. Voia). Springer, Berlin, pp. 51-70.

Liu, P., Lien, K., & Asche, F. (2016). The impact of media coverage and demographics on the demand for Norwegian salmon. Aquaculture Economics and Management, 20(4), 342-356.  doi: 10.1080/13657305.2016.1212126

Liu, B., Asseng, S., Müller, C., Ewert, F., Elliott, J., Lobell, D. , Martre, P., Ruane, A., Wallach, D., Jones, J. W., Rosenzweig, C., Aggarwal, P., Alderman, P., Anothai, J., Basso, B., Biernath, C., Cammarano, D., Challinor, A., Deryng, D., De Sanctis, G., Doltra, J., Fereres, E., C. Folberth, Garcia-Vila, M., Gayler, S., Hoogenboom, G., Hunt, L., Izaurralde, R., Jabloun, M., Jones, C., Kersebaum, K., Kimball, B., Koehler, A., Kumar, S. N., Nendel, C., O'Leary, G., Olesen, J., Ottman, M., Palosuo, T., Prasad, P., Priesack, E., Pugh, T., Reynolds, M., Rezaei, E., Rötter, R. P., Schmid, E., Semenov, M., Shcherbak, I., Stehfest, E., Stöckle, C., Stratonovitch, P., Streck, T., Supit, I., Tao, F., Thorburn, P., Waha, K., Wall, G., Wang, E., White, J. W., Wolf, J., Zhao, Z., & Zhu, Y. (2016). Similar estimates of temperature impacts on global wheat yield by three independent methods. Nature Climate Change, 6, 1130-1136. doi: 10.1038/nclimate3115

Maertens De Noordhout C., Devleesschauwer, B., Maertens De Noordhout, A., Blocher, J., Haagsma, J. A., Havelaar, A. H. & Speybroeck, N. (2016). Comorbidities and factors associated with central nervous system infections and death in non-perinatal listeriosis: a clinical case series. BMC Infect Dis, 16, 256. doi: 10.1186/s12879-016-1602-3.                                       

Mangen M. J. J., Havelaar, A. H., Haagsma, J. A., & Kretzschmar, M. E. E. (2016). The burden of Campylobacter-associated disease in six European countries. Microbial Risk Analysis, 2–3, 48-52. doi: 10.1016/j.mran.2016.04.001

Misund, B. & Asche, F. (2016). Hedging efficiency of Atlantic salmon futures. Aquaculture Economics and Management, 20(4), 368-381. doi: 10.1080/13657305.2016.1212123

Nasim, W., Ahmad, A., Belhouchette, H., Fahad, S., & Hoogenboom, G. (2016). Evaluation of the OILCROP-SUN model for sunflower hybrids under different agro-meteorological conditions of Punjab-Pakistan. Field Crops Research, 188(1), 17-30. doi: 10.1016/j.fcr.2016.01.011

Nasim, W., H. Belhouchette, Ahmad, A., Habib-ur-Rahman, M., Jabran, K., Ullah, K., Fahad, S., Shakeel, M. & Hoogenboom, G. (2016). Modelling climate change impacts and adaptation strategies for sunflower in Punjab-Pakistan. Outlook, 45(1), 39-45. doi: 10.5367/oa.2015.0226

Nasim, W., A. Ahmad, S. Ahmad, M. Nadeem, N. Masood, M. Shahid, M. Mubeen, and G. Hoogenboom (2016). Response of sunflower (Helianthus annuus L.) to nitrogen application grown under different agro-environments. Journal of Plant Nutrition, 10(1), 82-92. doi: 10.1080/01904167.2016.1201492

Nouri, M., Homaee, M., Bannayan, M., & Hoogenboom, G. (2016). Towards modeling soil texture-specific sensitivity of wheat yield and water balance to climatic changes. Agricultural Water Management, 177(1), 248-263. doi: 10.1016/j.agwat.2016.07.025

Oglend, A. and Asche, F. (2016). Cyclical Non-stationarity in Commodity Prices. Empirical Economics, 51(4), 1465-1479. doi: 10.1007/s00181-015-1060-6

Pacholewicz E., Lipman, L. J., Swart, A., Havelaar, A. H., & Heemskerk, W. J. (2016). Pre-scald brushing for removal of solids and associated broiler carcass bacterial contamination. Poult. Sci. 95(12), 2979-2985. doi: 10.3382/ps/pew257

Pacholewicz E., Swart, A., Wagenaar, J., Lipman, L. J., & Havelaar, A. H. (2016). Explanatory variables associated with Campylobacter and Escherichia coli concentrations on broiler chicken carcasses during processing in two slaughterhouses. Journal of Food Protection, 79(12), 2038-2047.             

Pacholewicz E., Barus, S. A. S., Swart, A., Havelaar, A. H., Lipman, L. J. A., & Luning, P. A. (2016). Influence of food handlers' compliance with procedures of poultry carcasses contamination: a case study concerning evisceration in broiler slaughterhouses. Food Control, 68, 367-378. doi: 10.1016/j.foodcont.2016.04.009

Pincinato, R. B. M. & Asche, F. (2016). The development of Brazilian Aquaculture: introduced and Native Species. Aquaculture Economics and Management, 20(3), 312-323. doi: 10.1080/13657305.2016.1177862

Pincinato, R. &  Asche, F. (2016). Market integration in Brazilian shrimp markets. Aquaculture Economics and Management, 20(4), 357-367. doi: 10.1080/13657305.2016.1212124

Poudel, R., Jumpponen, A., Schlatter, D. C., Paulitz, T. C., McSpadden Gardener, B. B., Kinkel, L. L. & Garrett, K. A. (2016). Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology, 106, 1083-1096. doi: 10.1094/PHYTO-02-16-0058-FI

Rahman, M. H. ur, Ahmad, A., Wajid, A., Hussain, M., Akhtar, J., & Hoogenboom, G. (2016). Estimation of temporal variation resilience in cotton varieties using statistical models. Pakistan Journal of Agricultural Sciences, 53(4), 787-807.

Saberali, S. F., Modarres-Sanavy, S. A. M., Bannayan, M., Aghaalikhani, M., Haghayegh, G. & Hoogenboom, G. (2016). Common bean canopy characteristics and N assimilation as affected by weed pressure and nitrogen rate. The Journal of Agricultural Science, 154(4), 598-611. doi: 10.1017/S0021859615000477

Salazar, M., Chaves, B. & Hoogenboom, G. (2016). Freezing tolerance of apple flower buds. Scientia Horticulturae, 198(1): 344-351. doi: 10.1016/j.scienta.2015.12.003

Sanatkar, M. R., White, W. N., Natarajan, B., Scoglio, C. and Garrett, K. A. (2016). Epidemic threshold of an SIS model in dynamic switching networks. IEEE Transactions on Systems, Man, and Cybernetics, 46 (3): 345-355. doi: 10.1109/TSMC.2015.2448061

Thomas‐Sharma, S., Abdurahman, A., Ali, S., Andrade‐Piedra, J., Bao, S., Charkowski, A., Crook, D., Kadian, M., Kromann, P., Struik, P., Torrance, L., Garrett, K. A., & Forbes, G. A. (2016). Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology, 65(1): 3-16. doi: 10.1111/ppa.12439

Van Leuken, J. P. G., Swart, A. N., Havelaar, A. H., Van Pul, A., Van der Hoek, W., & Heederik, D. (2016). Atmospheric dispersion modelling of bioaerosols that are pathogenic to humans and livestock – a review to inform risk assessment studies. Microbial Risk Analysis 1, 19-39. doi: 10.1016/j.mran.2015.07.002

Van Leuken, J., Swart, A., Brandsma, J., Terink, W., Van de Kassteele, J., Droogers, P., Sauter, F., Havelaar A. H., Van der Hoek, W. (2016). Human Q fever incidence is associated to spatiotemporal environmental conditions. One Health 2, 77-87. doi: 10.1016/j.onehlt.2016.03.004.

Van Leuken  J. P. G., A. N. Swart, Droogers, P., van Pul, A., D. Heederik, D., & Havelaar, A. H. (2016). Climate change effects on airborne pathogenic bioaerosol concentrations: a scenario analysis. Aerobiologia, 32, 607. doi: 10.1007/s10453-016-9435-5                       

van Lier, A., McDonald, S. A., Bouwknegt, M., EPI group, Kretzschmar, M. E., Havelaar, A. H., Mangen, M.-J. J. , Wallinga, J., De Melker, H. (2016). Disease burden of 32 infectious diseases in the Netherlands, 2007-2011. PLoS ONE 11(4): e0153106. doi:10.1371/journal.pone.0153106

Woli, P., Hoogenboom, G., & Alva, A. (2016). Simulation of potato yield, nitrate leaching, and profit margins as influenced by irrigation and nitrogen management in different soils and production regions. Agricultural Water Management, 171(1), 120-130. doi: 10.1016/j.agwat.2016.04.003

World Health Organization, Foodborne Epidemiology Reference Group, Source Attribution Task Force (2016). Research synthesis methods in an age of globalized risks: lessons from the Global Burden of Foodborne Disease Expert Elicitation. Risk Anal, 36, 191–202. doi:10.1111/risa.12385.

Zapata, D., Salazar, M., Chaves, B., Keller, M., & Hoogenboom, G. (2017). Predicting key phenological stages for 17 grapevine cultivars (Vitis vinifera L.). American Journal of Enology and Viticulture 68, 60-72. doi: 10.5344/ajev.2016.15077

Zheng, Z., Cai, H., Yu, L., & Hoogenboom, G. (2017). Application of the CSM-CERES-Wheat model for yield prediction and planting date evaluation at Guanzhong Plain in Northwest China. Agronomy Journal, 109(1), 204-217. doi:10.2134/agronj2016.05.0289

Zheng, Z., Cai, H., Chaves, B., Yu, L., & Hoogenboom, G. (2016). Limited irrigation for improving water use efficiency of winter wheat in the Guanzhong plain of northwest China. Transactions of American Society of Agricultural and Biological Engineers, 59(6), 1841-1852.  doi: 10.13031/trans.59.11810

  • Publications 2015

    Anderson, J. L., Anderson, C. M., Chu, J., Merethid, J., et al. (2015) The Fishery Performance Indicators: A Management Tool for Triple Bottom Line Outcomes. PLOS ONE 10(5): e0122809. doi:10.1371/journal.pone.0122809

    Anderson, J.L., Valderrama, D., & Jory, D. (Nov/ Dec 2015). Global Shrimp Production Review: Industry Projects Steady Recovery Following Disease Impacts” Global Aquaculture Advocate, 9-10.

    Sampson, G.S., Sanchirico, J. N., M., Roheim, C., Bush, S., Taylor, J. E., E.H. Allison, E. H., Anderson J. L., Ban, N. C., Fujita, R., Jupiter, S., & Wilson, J. R. (2015). Secure Sustainable Seafood from Developing Countries. Science, 348 (6234), 504-506. doi: 10.1126/science.aaa4639

    Kobayashi, M., Msangi, S., Batka, M., Vannuccini, S., & Anderson, J. L. (2015). Fish 2030: The Role and Opportunity for Aquaculture. Aquaculture Economics and Management 19, 1-20.