Institute for Sustainable Food Systems (ISFS)


Technical Reports:

Anderson, J. L., Garlock, T., & DeAlessi, M. (2016). The Fishery Performance Indicators: evaluating fishery management systems. Prepared for the Environmental Defense Fund (EDF). 102 pp.

Anderson, J. L., Anderson, C., Garlock, T., & DeAlessi, M. (2016). The Fishery Performance Indicators for California and Indonesia fisheries management systems. Prepared for The David and Lucile Packard Foundation. 75pp.

2016 Publications:

Ahmed, M., Akram, M.N.,  Asim, M., Aslam, M., Hassan, F., Higgins, S., Stöckle, C.O. & Hoogenboom, G. (2016). Calibration and validation of APSIM-Wheat and CERES-Wheat for spring wheat under rainfed conditions: models evaluation and application. Computers and Electronics in Agriculture, 123(1), 384-401. doi: 10.1016/j.compag.2016.03.015

Allard, J., P. Vincent, J.R. McElwaney, & Hoogenboom, G. (2016). A comparison of temperature data from automated and manual observing networks in Georgia and impacts of siting characteristics. Journal of Atmospheric and Oceanic Technology 33(7), 1473-1494. doi: 10.1175/JTECH-D-15-0161.1

Anderson, J. L. (Oct. 10, 2016). Global shrimp production survey: GOAL 2016 – production could reach 4.44 MMT by 2018. Global Aquaculture Advocate.

Anderson, J. L., Valderrama, D. & Jory, D. (Jan. 4, 2016). “GOAL shrimp production survey: recovery coming. Global Aquaculture Advocate.

Asche, F., Roll, K. H., & Tveteras, R. (2016) Profiting from agglomeration? Evidence from the salmon aquaculture industry. Regional Studies. 50(10), 1742-1754. doi: 10.1080/00343404.2015.1055460

Asche, F., Misund, B. & & Oglend, A. (2016). Determinants of the Atlantic salmon future risk premium. Journal of Commodity Markets, 2(1), 6-17. doi: 10.1016/j.jcomm.2016.07.001

Asche, F., Misund, B. & Oglend, A. (2016). The spot-forward relationship in the Atlantic salmon market. Aquaculture Economics and Management, 20(2), 222-234. doi: 10.1080/13657305.2016.1156192

Asche, F., & Oglend, A. (2016). The Relationship between input-factor and output prices in commodity industries: the case of Norwegian salmon aquaculture. Journal of Commodity Markets, 1(1), 35-47. doi: 10.1016/j.jcomm.2015.11.001

Aspinall, W. P., Cooke, R. M., Havelaar, A. H., Hoffmann, S., & Hald, T. (2016). Evaluation of a performance-based expert elicitation: WHO global attribution of foodborne diseases. PLoS ONE 11(3), e0149817. doi: 10.1371/journal.pone.0149817 

Badr, G., Klein, L.J., Freitag, M., Albrech, C. M., Marianno, F. J., Lu, S., Shao, X., Hinds, N., Hoogenboom, G., & Hamann, H. F. (2016). Toward large-scale crop production forecasts for global food security. IBM Research & Development 60(5/6), 5-1 – 5:11. doi: 10.1147/JRD.2016.2591698

Barrett, C. B., & Palm, C. A. (2016). Meeting the global food security challenge: obstacles and opportunities ahead. Global Food Security 11, 1-4. doi: 10.1016/j.gfs.2016.11.001

Bronnmann, J. & Asche, F. (2016). The values of product attributes, brands and private labels: an analysis of frozen seafood in Germany. Journal of Agricultural Economics, 67(1), 231-244. doi: 10.1111/1477-9552.12138

Cassini, A., Hathaway, S., Havelaar, A., Koopmans, M., Koutsoumanis, K., Messens, W., Muller-Seitz, G., Nørrung, B., Rizzi, V. & Scheutz, F. (2016). Microbiological risk assessment. EFSA Journal 14(S1), s0507. doi: 10.2903/j.efsa.2016.s0507

Dokoohaki, H., Gheysari, M., Mousavi, S. F., Zand-Parsa, S., Miguez, F. E., Archontoulis, S. V., & Hoogenboom, G. (2016). Coupling and testing a new soil water module in DSSAT CERES-Maize model for maize production under semi-arid condition. Agricultural Water Management 163(1), 90-99. doi: 10.1016/j.agwat.2015.09.002

Dendy, S. P., Tong, B., Alexander H. A., Fay, P. A., Murray, L., Xing, Y. & Garrett, K. A. (2017). A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology. Accepted Author Manuscript. doi: 10.1111/ppa.12678

Faria, de R. T., Casão Jr., R., Werner, S. S., Zanão Jr., L. A., & Hoogenboom, G. (2016). Soybean yield in relation to distance from the Itaipu reservoir. International Journal of Biometeorology 60(7), 1015-1028. doi: 10.1007/s00484-015-1093-8

Fleisher, D. H., Condori, B., Quiroz, R., Alva, A., Asseng, S., Barreda, C., Bindi, M., Boote, K. J., Ferrise, R.,  Franke, A. C., Govindakrishnan, P. M., Harahagazwe, D., Hoogenboom, G., Naresh Kumar, S., Merante, P., Nendel, C.,  Olesen, J. E., Parker, P. S., Raes, D., Raymundo, R., Ruane, A. C., Stockle, C., Supit, I., Vanuytrecht, E., Wolf, J., & Woli, P. (2016). A potato model inter-comparison across varying climates and productivity levels. Global Change Biology. Accepted for publication. doi: 10.1111/gcb.13411

Franssen F., Swart, A., van der Giessen, J., Havelaar, A. & Takumi, K. (2017). Parasite to patient: a quantitative risk model for Trichinella spp. in pork and wild boar meat. Int J Food Microbiol. 241, 262-275. doi: 10.1016/j.ijfoodmicro.2016.10.029.

Gibb, H., Devleesschauwer, B., Bolger, P. M., Wu, F., Ezendam, J., Cliff, J., Zeilmaker, M., Verger, P., Pitt, J., Baines, J., Adegoke, G., Afshari, R., Liu, Y., Bokkers, B., Van Loveren, H., Mengelers, M., Brandon, E., Havelaar, A. H., & Bellinger, D. C. (2016). Asian implications of Aflatoxin and Dioxin foodborne chemical exposures based on World Health Organization estimates. Asia Pacific J Med Tox, 4, 130-132. doi: 10.12688/f1000research.7340.1

Garrett, K. A., Frank, E. E., Dendy, S. P., Leslie, J. F., & Saleh, A. (2016). Microbiome engineers: grazers, browsers, and the phytobiome stampede. bioRxiv, 087494. doi: 10.1101/087494.

Hald, T., Aspinall, W., Devleesschauwer, B., Cooke, R., Corrigan, T., Havelaar, A. H., Gibb, H., Torgerson, P. R., Kirk, M. D., Angulo, F. J., Lake, R. J., Speybroeck, N., & Hoffmann, S. (2016). World Health Organization estimates of the relative contributions of food to the burden of disease due to selected foodborne hazards: a structured expert elicitation. PLOS One, 11, e0145839. doi: 10.1371/ journal.pone.0145839.

Han, Y., Chu, J. & Anderson, J. L. (Aug. 12, 2016). Survey: food safety becoming Chinese consumers’ top priority. Global Aquaculture Advocate.

Havelaar, A. H., & Swart, A. (2016). Impact of waning acquired immunity and asymptomatic infections on case-control studies for enteric pathogens. Epidemics, 17: 56-63. doi: 10.1016/j.epidem.2016.11.004.

Hondrade, R. F., Hondrade, E., Zheng, L., Elazegui, F., Duque, J., Mundt, C. C., Vera Cruz, C. M., & Garrett, K. A. (2017). Cropping system diversification for food production in Mindanao rubber plantations: A rice cultivar mixture and rice intercropped with mungbean. PeerJ 5, e2975 doi: 10.7717/peerj.2975

Jing, Q., Shang, J., Qian, B., Hoogenboom, G., Huffman, T., Liu, J., Ma, B., Geng, X., Jiao, X., Kovacs, J., & Walters, D. (2016). Evaluation of the CSM-CROPGRO-Canola model for simulating canola growth and yield at West Nipissing in eastern Canada. Agronomy Journal, 108(2): 575-584. doi: 10.2134/agronj2015.0401

Kanter, D. R., Musumba, M., Wood, S. L. R., Palm, C., Antle, J., Balvanera, P., Dale, V. H., Havlik, P., Kline, K. L., Scholes, R. J., Thornton, P., Tittonell, P., & Andelman, S. (2016). Evaluating agricultural trade-offs in the age of sustainable development. Agricultural Systems. doi: 10.1016/j.agsy.2016.09.010

Kiani, M., Gheysari, M., Mostafazadeh-Fard, B., Majidi, M. M., Karchani, K., & Hoogenboom, G. (2016). Effect of the interaction of water and nitrogen on sunflower under drip irrigation in an arid region. Agricultural Water Management, 171(1): 162-172. doi: 10.1016/j.agwat.2016.04.008

Kuehne A., Bouwknegt, M., Havelaar, A., Gilsdorf, A., Hoyer, P., Stark, K., Werber, D. & the HUS active surveillance network Germany (2016). Estimating true incidence of O157 and non-O157 Shiga toxin-producing Escherichia coli illness in Germany based on notification data of haemolytic uraemic syndrome. Epidemiol Infect., 144(15), 3305-3315. doi:  10.1017/S0950268816001436

Kumbhakar, S. C., Asche, F., Roll, K., & Tveteras, R. (2016). A general error revenue function model with technical inefficiency: an application to Norwegian fishing trawlers. In Productivity and Efficiency Analysis (ed. W. Greene, L. Khalaf, R. Sickles, M. Veall, M-C. Voia). Springer, Berlin, pp. 51-70.

Liu, P., Lien, K., & Asche, F. (2016). The impact of media coverage and demographics on the demand for Norwegian salmon. Aquaculture Economics and Management, 20(4), 342-356.  doi: 10.1080/13657305.2016.1212126

Liu, B., Asseng, S., Müller, C., Ewert, F., Elliott, J., Lobell, D. , Martre, P., Ruane, A., Wallach, D., Jones, J. W., Rosenzweig, C., Aggarwal, P., Alderman, P., Anothai, J., Basso, B., Biernath, C., Cammarano, D., Challinor, A., Deryng, D., De Sanctis, G., Doltra, J., Fereres, E., C. Folberth, Garcia-Vila, M., Gayler, S., Hoogenboom, G., Hunt, L., Izaurralde, R., Jabloun, M., Jones, C., Kersebaum, K., Kimball, B., Koehler, A., Kumar, S. N., Nendel, C., O'Leary, G., Olesen, J., Ottman, M., Palosuo, T., Prasad, P., Priesack, E., Pugh, T., Reynolds, M., Rezaei, E., Rötter, R. P., Schmid, E., Semenov, M., Shcherbak, I., Stehfest, E., Stöckle, C., Stratonovitch, P., Streck, T., Supit, I., Tao, F., Thorburn, P., Waha, K., Wall, G., Wang, E., White, J. W., Wolf, J., Zhao, Z., & Zhu, Y. (2016). Similar estimates of temperature impacts on global wheat yield by three independent methods. Nature Climate Change, 6, 1130-1136. doi: 10.1038/nclimate3115

Maertens De Noordhout C., Devleesschauwer, B., Maertens De Noordhout, A., Blocher, J., Haagsma, J. A., Havelaar, A. H. & Speybroeck, N. (2016). Comorbidities and factors associated with central nervous system infections and death in non-perinatal listeriosis: a clinical case series. BMC Infect Dis, 16, 256. doi: 10.1186/s12879-016-1602-3.                                       

Mangen M. J. J., Havelaar, A. H., Haagsma, J. A., & Kretzschmar, M. E. E. (2016). The burden of Campylobacter-associated disease in six European countries. Microbial Risk Analysis, 2–3, 48-52. doi: 10.1016/j.mran.2016.04.001

Misund, B. & Asche, F. (2016). Hedging efficiency of Atlantic salmon futures. Aquaculture Economics and Management, 20(4), 368-381. doi: 10.1080/13657305.2016.1212123

Nasim, W., Ahmad, A., Belhouchette, H., Fahad, S., & Hoogenboom, G. (2016). Evaluation of the OILCROP-SUN model for sunflower hybrids under different agro-meteorological conditions of Punjab-Pakistan. Field Crops Research, 188(1), 17-30. doi: 10.1016/j.fcr.2016.01.011

Nasim, W., H. Belhouchette, Ahmad, A., Habib-ur-Rahman, M., Jabran, K., Ullah, K., Fahad, S., Shakeel, M. & Hoogenboom, G. (2016). Modelling climate change impacts and adaptation strategies for sunflower in Punjab-Pakistan. Outlook, 45(1), 39-45. doi: 10.5367/oa.2015.0226

Nasim, W., A. Ahmad, S. Ahmad, M. Nadeem, N. Masood, M. Shahid, M. Mubeen, and G. Hoogenboom (2016). Response of sunflower (Helianthus annuus L.) to nitrogen application grown under different agro-environments. Journal of Plant Nutrition, 10(1), 82-92. doi: 10.1080/01904167.2016.1201492

Nouri, M., Homaee, M., Bannayan, M., & Hoogenboom, G. (2016). Towards modeling soil texture-specific sensitivity of wheat yield and water balance to climatic changes. Agricultural Water Management, 177(1), 248-263. doi: 10.1016/j.agwat.2016.07.025

Oglend, A. and Asche, F. (2016). Cyclical Non-stationarity in Commodity Prices. Empirical Economics, 51(4), 1465-1479. doi: 10.1007/s00181-015-1060-6

Pacholewicz E., Lipman, L. J., Swart, A., Havelaar, A. H., & Heemskerk, W. J. (2016). Pre-scald brushing for removal of solids and associated broiler carcass bacterial contamination. Poult. Sci. 95(12), 2979-2985. doi: 10.3382/ps/pew257

Pacholewicz E., Swart, A., Wagenaar, J., Lipman, L. J., & Havelaar, A. H. (2016). Explanatory variables associated with Campylobacter and Escherichia coli concentrations on broiler chicken carcasses during processing in two slaughterhouses. Journal of Food Protection, 79(12), 2038-2047.             

Pacholewicz E., Barus, S. A. S., Swart, A., Havelaar, A. H., Lipman, L. J. A., & Luning, P. A. (2016). Influence of food handlers' compliance with procedures of poultry carcasses contamination: a case study concerning evisceration in broiler slaughterhouses. Food Control, 68, 367-378. doi: 10.1016/j.foodcont.2016.04.009

Pincinato, R. B. M. & Asche, F. (2016). The development of Brazilian Aquaculture: introduced and Native Species. Aquaculture Economics and Management, 20(3), 312-323. doi: 10.1080/13657305.2016.1177862

Pincinato, R. &  Asche, F. (2016). Market integration in Brazilian shrimp markets. Aquaculture Economics and Management, 20(4), 357-367. doi: 10.1080/13657305.2016.1212124

Poudel, R., Jumpponen, A., Schlatter, D. C., Paulitz, T. C., McSpadden Gardener, B. B., Kinkel, L. L. & Garrett, K. A. (2016). Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology, 106, 1083-1096. doi: 10.1094/PHYTO-02-16-0058-FI

Rahman, M. H. ur, Ahmad, A., Wajid, A., Hussain, M., Akhtar, J., & Hoogenboom, G. (2016). Estimation of temporal variation resilience in cotton varieties using statistical models. Pakistan Journal of Agricultural Sciences, 53(4), 787-807.

Saberali, S. F., Modarres-Sanavy, S. A. M., Bannayan, M., Aghaalikhani, M., Haghayegh, G. & Hoogenboom, G. (2016). Common bean canopy characteristics and N assimilation as affected by weed pressure and nitrogen rate. The Journal of Agricultural Science, 154(4), 598-611. doi: 10.1017/S0021859615000477

Salazar, M., Chaves, B. & Hoogenboom, G. (2016). Freezing tolerance of apple flower buds. Scientia Horticulturae, 198(1): 344-351. doi: 10.1016/j.scienta.2015.12.003

Sanatkar, M. R., White, W. N., Natarajan, B., Scoglio, C. and Garrett, K. A. (2016). Epidemic threshold of an SIS model in dynamic switching networks. IEEE Transactions on Systems, Man, and Cybernetics, 46 (3): 345-355. doi: 10.1109/TSMC.2015.2448061

Thomas‐Sharma, S., Abdurahman, A., Ali, S., Andrade‐Piedra, J., Bao, S., Charkowski, A., Crook, D., Kadian, M., Kromann, P., Struik, P., Torrance, L., Garrett, K. A., & Forbes, G. A. (2016). Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology, 65(1): 3-16. doi: 10.1111/ppa.12439

Van Leuken, J. P. G., Swart, A. N., Havelaar, A. H., Van Pul, A., Van der Hoek, W., & Heederik, D. (2016). Atmospheric dispersion modelling of bioaerosols that are pathogenic to humans and livestock – a review to inform risk assessment studies. Microbial Risk Analysis 1, 19-39. doi: 10.1016/j.mran.2015.07.002

Van Leuken, J., Swart, A., Brandsma, J., Terink, W., Van de Kassteele, J., Droogers, P., Sauter, F., Havelaar A. H., Van der Hoek, W. (2016). Human Q fever incidence is associated to spatiotemporal environmental conditions. One Health 2, 77-87. doi: 10.1016/j.onehlt.2016.03.004.

Van Leuken  J. P. G., A. N. Swart, Droogers, P., van Pul, A., D. Heederik, D., & Havelaar, A. H. (2016). Climate change effects on airborne pathogenic bioaerosol concentrations: a scenario analysis. Aerobiologia, 32, 607. doi: 10.1007/s10453-016-9435-5                       

van Lier, A., McDonald, S. A., Bouwknegt, M., EPI group, Kretzschmar, M. E., Havelaar, A. H., Mangen, M.-J. J. , Wallinga, J., De Melker, H. (2016). Disease burden of 32 infectious diseases in the Netherlands, 2007-2011. PLoS ONE 11(4): e0153106. doi:10.1371/journal.pone.0153106

Woli, P., Hoogenboom, G., & Alva, A. (2016). Simulation of potato yield, nitrate leaching, and profit margins as influenced by irrigation and nitrogen management in different soils and production regions. Agricultural Water Management, 171(1), 120-130. doi: 10.1016/j.agwat.2016.04.003

World Health Organization, Foodborne Epidemiology Reference Group, Source Attribution Task Force (2016). Research synthesis methods in an age of globalized risks: lessons from the Global Burden of Foodborne Disease Expert Elicitation. Risk Anal, 36, 191–202. doi:10.1111/risa.12385.

Zapata, D., Salazar, M., Chaves, B., Keller, M., & Hoogenboom, G. (2017). Predicting key phenological stages for 17 grapevine cultivars (Vitis vinifera L.). American Journal of Enology and Viticulture 68, 60-72. doi: 10.5344/ajev.2016.15077

Zheng, Z., Cai, H., Yu, L., & Hoogenboom, G. (2017). Application of the CSM-CERES-Wheat model for yield prediction and planting date evaluation at Guanzhong Plain in Northwest China. Agronomy Journal, 109(1), 204-217. doi:10.2134/agronj2016.05.0289

Zheng, Z., Cai, H., Chaves, B., Yu, L., & Hoogenboom, G. (2016). Limited irrigation for improving water use efficiency of winter wheat in the Guanzhong plain of northwest China. Transactions of American Society of Agricultural and Biological Engineers, 59(6), 1841-1852.  doi: 10.13031/trans.59.11810

Publications 2015

Anderson, J. L., Anderson, C. M., Chu, J., Merethid, J., et al. (2015) The Fishery Performance Indicators: A Management Tool for Triple Bottom Line Outcomes. PLOS ONE 10(5): e0122809. doi:10.1371/journal.pone.0122809

Anderson, J.L., Valderrama, D., & Jory, D.  (Jan. 4, 2016). GOAL Shrimp Production Survey: Recovery Coming.

Anderson, J.L., Valderrama, D., & Jory, D. (Nov/ Dec 2015). Global Shrimp Production Review: Industry Projects Steady Recovery Following Disease Impacts” Global Aquaculture Advocate, 9-10.

Sampson, G.S., Sanchirico, J. N., M., Roheim, C., Bush, S., Taylor, J. E., E.H. Allison, E. H., Anderson J. L., Ban, N. C., Fujita, R., Jupiter, S., & Wilson, J. R. (2015). Secure Sustainable Seafood from Developing Countries. Science, 348 (6234), 504-506. doi: 10.1126/science.aaa4639

Kobayashi, M., Msangi, S., Batka, M., Vannuccini, S., & Anderson, J. L. (2015). Fish 2030: The Role and Opportunity for Aquaculture. Aquaculture Economics and Management 19, 1-20.