Institute for Sustainable Food Systems (ISFS)


Most Recent Annual Report:

2017 ISFS Annual Report



Technical Reports:

Anderson, J. L., Garlock, T., & DeAlessi, M. (2016). The Fishery Performance Indicators: evaluating fishery management systems. Prepared for the Environmental Defense Fund (EDF). 102 pp.

Anderson, J. L., Anderson, C., Garlock, T., & DeAlessi, M. (2016). The Fishery Performance Indicators for California and Indonesia fisheries management systems. Prepared for The David and Lucile Packard Foundation. 75pp.

2017 Publications:

Abbas, G., Ahmad, S., Ahmad, A., Nasim, W., Fatima, Z., Hussain, S., Rehman., M. H. U., Khan, M. A., Hasanuzzaman, M., Fahad, S., Boote, K. J., & Hoogenboom, G. (2017). Quantification the impacts of climate change and crop management on phenology of maize-based cropping system in Punjab, Pakistan. Agricultural and Forest Meteorology, 247, 42-55. 1016/j.agrformet.2017.07.012

Abolofia, J., Wilen, J. E., & Asche, F. (2017). The Cost of Lice: Quantifying the Impacts of Parasitic Sea Lice on Farmed Salmon. Marine Resource Economics, 32(3), 329-349. 1086/691981

Adhikari, P., N. Omani N., Ale, S., DeLaune, P. B., Thorp, K. R., Barnes, E. M., & G. Hoogenboom (2017). Simulated effects of winter wheat cover crop on cotton production systems of the Texas rolling plains. Transactions of the American Society of Agricultural and Biological Agricultural Engineers, 60(6):2083-2096.

Ahmad, S., Abbas, G., Fatima, Z., Khan, R. J., Anjum, M. A., Ahmed, M., Khan, M. A., Porter, C. H., & Hoogenboom, G (2017). Quantification of the impacts of climate warming and crop management on canola phenology in Punjab, Pakistan Journal of Agronomy and Crop Science, 203(5), 442-452. 1111/jac.12206

Andersen, K. F.,Buddenhagen, C. E., Rachkara, P., Gibson, R., Kalule, S., Phillips, D., & Garrett, K. A. (2017). Analyzing key nodes and epidemic risk in seed networks: Sweetpotato in Northern Uganda. bioRxiv: (preprint)

Anderson, J. L., Anderson, C. M., Chu, J. & Meredith, J. (2016). Fishery Performance Indicators Manual (Version 1.3).

Anderson, J. L., Asche, F., Garlock, T., & Chu, J. J. (2017). Aquaculture: Its Role in the Future of Food In World Agricultural Resources and Food Security: International Food Security, Frontiers of Economics and Globalization series number 17.

Asche, F. (2017). New markets, new technologies and new opportunities in aquaculture. Aquaculture Economics & Management, 21(1), 1-8. 1080/13657305.2016.1272649

Asche, F., & Bronnmann, J. (2017). Price premiums for ecolabelled seafood: MSC certification in Germany. Australian Journal of Agricultural and Resource Economics, 61(4), 576-589. 1111/1467-8489.12217

Asche, F., Oglend, A., & Osmundsen, P. (2017). Modeling UK Natural Gas Prices when Gas Prices Periodically Decouple from the Oil Price. Energy Journal, 38(2), 131-148. 5547/01956574.38.2.fasc

Asche, F., Oglend, A., & Kleppe, T. S. (2017). Price Dynamics in Biological Production Processes Exposed to Environmental Shocks. American Journal of Agricultural Economics, 99(5), 1246-1264. 1093/ajae/aax048

Awais, M., Wajid, A., Nasim, W., Ahmad, A., Saleem, M. F., Raza, M. A. S., …Hoogenboom, G. (2017). Modeling the water and nitrogen productivity of sunflower using OILCROP-SUN model in Pakistan. Field Crops Research, 205, 67-77. 1016/j.fcr.2017.01.013

Barrett, C.B. & Palm, C. (2016). Meeting the global food security challenge: Obstacles and opportunities ahead. Global Food Security 11, 1-4.

Bao, Y. W., Hoogenboom, G., McClendon, R., & Vellidis, G. (2017). A comparison of the performance of the CSM-CERES-Maize and EPIC models using maize variety trial data. Agricultural Systems, 150, 109-119. 1016/j.agsy.2016.10.006

Bronnmann, J., & Asche, F. (2017). Sustainable Seafood From Aquaculture and Wild Fisheries: Insights From a Discrete Choice Experiment in Germany. Ecological Economics, 142, 113-119. 1016/j.ecolecon.2017.06.005

Buddenhagen, C. E., Andersen, K. F., Fulton, J. C., & A. Garrett (2017). Survey methods for seed system network analysis. PeerJ Preprints, 5:e2806v2801. (preprint).

Buddenhagen, E.,   Hernandez Nopsa, J. F., Andersen, K. F., Andrade-Piedra, J., Forbes, G. A., Kromann, P., Thomas-Sharma, S., Useche, P., & K. A. Garrett (2017). Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador.  Phytopathology, 107, 1209-1218.

Chaves, B., Salazar M. R., Schmidt, T., Dasgupta, N., & Hoogenboom, G. (2017). Modeling apple bloom phenology. Acta Horticulturae, 1160, 201-206.

Chaves, B., Salazar M. R., Schmidt, T., Dasgupta, N., & Hoogenboom, G. (2017). Modeling fruit growth of apple. Acta Horticulturae, 1160, 335-340.

Chu, J. J., Garlock, T. M., Sayon, P., Asche, F., & Anderson, J. L. (2017). Impact evaluation of a fisheries development project. Marine Policy, 85, 141-149 . 1016/j.marpol.2017.08.024

Choudhury, R. A., Garrett, K. A., Klosterman, S. J., Subbarao, K. V., & McRoberts N. (2017).  A framework for optimizing phytosanitary thresholds in seed systems. Phytopathology, 107, 1219-1228.

Dendy, S. P., Tong, B., Alexander, H. M., Fay, P. A., Murray, L., Xing, Y., & Garrett, K. A. (2017). A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology, 66(8), 1308-1317. 1111/ppa.12678

Devleesschauwer, B., Marvasi, M., Giurcanu, M. C., Hochmuth, G. J., Speybroeck, N., Havelaar, A. H., & Teplitski, M. (2017). High relative humidity pre-harvest reduces post-harvest proliferation of Salmonella in tomatoes. Food Microbiology, 66, 55-63. doi:10.1016/

Dokoohaki, H., Gheysari M., Mousavi, S. F., & Hoogenboom, G. (2017). Effects of different irrigation regimes effects on soil moisture availability evaluated by the CSM-CERES-Maize model under semi-arid conditions. Ecohydrology & Hydrobiology, 17, 207-216.

Dorado-Garcia, A., Smid, J. H., van Pelt, W., Bonten, M. J. M., Fluit, A. C., van den Bunt, G., . . . Heederik, D. J. J. (2017). Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis. J Antimicrob Chemother., doi:10.1093/jac/dkx397

Elsayed, M.L.M., M. Medany, G. Hoogenboom, M. Rinaldi, S. Bona, and P. Sambo (2017). Simulating planting date effects on processing tomato growth in Italy using the CSM CROPGRO model. Egyptian Journal of Soil Science, 57(4):429-442.

Fleisher, D. H., Condori, B., Quiroz, R., Alva, A., Asseng, S., Barreda, C., … & Woli, P. (2017). A potato model intercomparison across varying climates and productivity levels. Global Change Biology, 23(3), 1258-1281. 1111/gcb.13411

Franssen, F., Swart, A., van der Giessen, J., Havelaar, A., & Takumi, K. (2017). Parasite to patient: A quantitative risk model for Trichinella spp. in pork and wild boar meat. Int J Food Microbiol, 241, 262-275. doi:10.1016/j.ijfoodmicro.2016.10.029

Garrett, K. A., Andersen, K. F., Asche, F., Bowden, R. L., Forbes, G. A., Kulakow, P. A., & Zhou, B. (2017). Resistance Genes in Global Crop Breeding Networks. Phytopathology, 107(10), 1268-1278. 1094/PHYTO-03-17-0082-F1

Garrett, K. A., Frank, E., Dendy, S. P., Leslie, J. F., & Saleh, A. (2016). Microbiome engineers: Grazers, browsers, and the phytobiome stampede. bioRxiv, (preprint).

Grabowski, P., Musumba, M. Palm, C. & Snapp, S. (2018). Sustainable agricultural intensification and measuring the immeasurable: Do we have a choice? Chapter 29 In: Bell, S. and Morse, S. (eds.) The Routledge Handbook of Sustainability Indicators and Indices. Taylor and Francis. ISBN 1138674761, 9781138674769

Havelaar, A. H., Graveland, H., van de Kassteele, J., Zomer, T. P., Veldman, K., & Bouwknegt, M. (2017). A summary index for antimicrobial resistance in food animals in the Netherlands. BMC Vet Res, 13(1), 305. doi:10.1186/s12917-017-1216-z

Havelaar, A. H., Vazquez, K. M., Topalcengiz, Z., Munoz-Carpena, R., & Danyluk, M. D. (2017). Evaluating the U.S. Food Safety Modernization Act Produce Safety Rule Standard for Microbial Quality of Agricultural Water for Growing Produce. J Food Prot, 80(11), 1832-1841. doi:10.4315/0362-028X.JFP-17-122

He, W.T., Yang, J. Y., Drury, C. F., Smith, W. N., Grant, B. B., He, P., …Hoogenboom, G.(2018). Estimating the impacts of climate change on crop yields and N2O emissions for conventional and no-tillage in southwestern Ontario, Canada. Agricultural Systems, 159, 187-198.

Hickman, J. E., Huang, Y. X., Wu, S. L., Diru, W., Groffman, P. M., Tully, K. L., & Palm, C. A. (2017). Nonlinear response of nitric oxide fluxes to fertilizer inputs and the impacts of agricultural intensification on tropospheric ozone pollution in Kenya. Global Change Biology, 23(8), 3193-3204. 1111/gcb.13644

Hilker, F. M., Allen, L. J. S., Bokil, V. A., Briggs, C. J., Feng, Z. L., Garrett, K. A., … Cunniffe, N. J. (2017). Modeling Virus Coinfection to Inform Management of Maize Lethal Necrosis in Kenya. Phytopathology, 107(10), 1095-1108. 1094/PHYTO-03-17-0080-F1

Hoffmann, S., Devleesschauwer, B., Aspinall, W., Cooke, R., Corrigan, T., Havelaar, A., … Hald, T. (2017). Attribution of global foodborne disease to specific foods: Findings from a World Health Organization structured expert elicitation. PLoS One, 12(9), e0183641. doi:10.1371/journal.pone.0183641

Hondrade, R. F., Hondrade, E., Zheng, L. Q., Elazegui, F., Duque, J. A. L. J. E., Mundt, C. C., Cruz, C. M. V., & Garrett, K. A. (2017). Cropping system diversification for food production in Mindanao rubber plantations: a rice cultivar mixture and rice intercropped with mungbean. PEERJ 5, e2975. 7717/peerj.2975

Kanter, D.R., Musumba, M., Wood, S. L. R., Palm, C., Antle, J., Balvanera, P., ... Andelman, S. (2016). Evaluating agricultural trade-offs in the age of sustainable development. Agricultural Systems,

Kirk, M. D., Angulo, F. J., Havelaar, A. H., & Black, R. E. (2017). Diarrhoeal disease in children due to contaminated food. Bull World Health Organ 95(3), 233-234. doi:10.2471/BLT.16.173229

Loison, R., Audebert, A., Debaeke, P., Hoogenboom, G., Leroux, L., Oumarou, P., & Gérardeaux, E.. (2017). Designing cotton ideotypes for the future: Reducing risk of crop failure for low input rainfed conditions in Northern Cameroon. European Journal of Agronomy 90, 162-173. 1016/j.eja.2017.08.003

Lopez, J. R., Winter, J.M., Elliott, J., Ruane, A. C., Porter, C. H., & Hoogenboom, G. (2017). Integrating growth stage deficit irrigation into a process based crop model. Agricultural and Forest Meteorology, 243(1), 84-92. 1016/j.agrformet.2017.05.001

Maertens de Noordhout, C., Devleesschauwer, B., Haagsma, J. A., Havelaar, A. H., Bertrand, S., Vandenberg, O., . . . Speybroeck, N. (2017). Burden of salmonellosis, campylobacteriosis and listeriosis: a time series analysis, Belgium, 2012 to 2020. Eurosurveillance, 22(38), 30615. doi: 10.2807/1560-7917.ES.2017.22.38.30615

Maertens de Noordhout, C., Devleesschauwer, B., Salomon, J. A., Turner, H., Cassini, A., Colzani, E., . . . Haagsma, J. A. (2017). Disability weights for infectious diseases in four European countries: comparison between countries and across respondent characteristics. European Journal of Public Health, 28(1), 124-133. doi:10.1093/eurpub/ckx090

Martre, P., Reynolds, M.P., Asseng, S. Ewert, F., Alderman, P.D., Cammarano D., ... Zhu Y. (2016). The International Heat Stress Genotype Experiment for modeling wheat response to heat: field experiments and AgMIP-Wheat multi-model simulations. Open Data Journal for Agricultural Research, 3, 23-28.

Musumba, M., Grabowski, P., Palm C., & Snapp, S. (2017). Guide for the Sustainable Intensification Framework. USAID Feed the Future Program.

Musumba, M., P. Grabowski, C. Palm, & S. Snapp. (2017). Sustainable Intensification Assessment Methods Manual.

Nasim, W., Ahmad, A., Ahmad, S., Nadeem, M., Masood, N., Shahid, M., Mubeen, M., Hoogenboom, G., & Fahad, S. (2017). Response of sunflower hybrids to nitrogen application grown under different agro-environments. Journal of Plant Nutrition, 40(1), 82-92.1080/01904167.2016.1201492

Nouri, M., Homaee, M., Bannayan, M., & Hoogenboom, G. (2017). Towards shifting planting date as an adaptation practice for rainfed wheat response to climate change. Agricultural Water Management 186(1), 108-119. doi: 1016/j.agwat.2017.03.004

Oseghale, S. E., Remison, S. U., Otamere, E. I., Eifediyi, K. E., & Hoogenboom, G. (2017). Modelling Pod Growth Rate of Bambara Groundnut (Vigna subterranea) in Response to Photoperiod and Temperature. Crop Science, 57(6), 3145-3155. doi: 10.2135/cropsci2016.08.0714

Palm, C., Neill, C., Lefebvre, P., & Tully, K. (2017). Targeting Sustainable Intensification of Maize-Based Agriculture in East Africa. Tropical Conservation Science, 10. doi: 1177/1940082917720670

Ploetz, R. C., Kendra, P. E., Choudhury, R. A., Rollins, J. A., Campbell, A., Garrett, K., Hughes, M., & Dreaden, T. (2017). Laurel Wilt in Natural and Agricultural Ecosystems: Understanding the Drivers and Scales of Complex Pathosystems. Forests, 8(2), 48. 3390/f8020048

Russo, T. A., Tully, K., Palm, C., & Neill, C. (2017). Leaching losses from Kenyan maize cropland receiving different rates of nitrogen fertilizer. Nutrient Cycling in Agroecosystems, 108(2), 195-209. 1007/s10705-017-9852-z

Salehnia, N., Alizadeh, A., Sanaeinejad, H., Bannayan, M., Zarrin, A., Hoogenboom, G. (2017). Estimation of meteorological drought indices based on AgMERRA precipitation data and station-observed precipitation data. Journal of Arid Land, 9(6), 797-809. 1007/s40333-017-0070-y

Savary, S., Bregaglio, S., Willocquet, L., Gustafson, D., D'Croz, D. M., Sparks, A., ... Garrett, K. (2017). Crop health and its global impacts on the components of food security. Food Security, 9(2), 311-327. 1007/s12571-017-0659-1

Sharda, V., Handyside, C., Chaves, B., McNider, R. T., & Hoogenboom, G. (2017). The impact of spatial soil variability on the simulation of regional maize yield. Transactions of the American Society of Agricultural and Agricultural Engineers, 60(6),2137-2148.

Siad, S. M., Gioia, A., Hoogenboom, G., Iacobellis, V., Novelli, A., Tarantino, E., & Zdruli, P. (2017). Durum Wheat Cover Analysis in the Scope of Policy and Market Price Changes: A Case Study in Southern Italy. Agriculture-Based, 7(2), 12. 3390/agriculture7020012

Smith, M. D., Oglend, A., Kirkpatrick, A. J., Asche, F., Bennear, L. S., Craig, J. K., & Nance, J. M. (2017). Seafood prices reveal impacts of a major ecological disturbance. Proceedings of the National Academy of Sciences of the United States of America, 114(7), 1512-1517. 1073/pnas.1617948114

Thomas-Sharma, S., Andrade-Piedra, J., Yepes, M. C., Nopsa, J. F. H., Jeger, M. J., Jones, R. A. C., ... Garrett, K. A. (2017). A Risk Assessment Framework for Seed Degeneration: Informing an Integrated Seed Health Strategy for Vegetatively Propagated Crops. Phytopathology, 107(10), 1123-1135. 1094/PHYTO-09-16-0340-R

Wang, E., Martre, P., Zhao, Z., Ewert, F., Maiorano, A., Roetter, R. P., ... Asseng, S. (2017). The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants, 3(8), 17102. 1038/nplants.2017.102

Watmough, G. R., Palm, C. A., & Sullivan, C. (2017). An operational framework for object-based land use classification of heterogeneous rural landscapes. International Journal of Applied Earth Observation and Geoinformation, 54, 134-144. 1016/j.jag.2016.09.012

Xing, Y., Hernandez Nopsa, J., Andrade-Piedra, J., Beed, F., Blomme, G., Carvajal Yepes, M., ... Garrett, K. A. (2017). Global cropland connectivity: A risk factor for invasion and saturation by emerging pathogens and pests. bioRxiv: (preprint)

Zapata, D., Salazar-Gutierrez, M., Chaves, B., Keller, M., & Hoogenboom, G. (2017). Predicting Key Phenological Stages for 17 Grapevine Cultivars (Vitis vinifera L.). American Journal of Enology and Viticulture, 68(1), 60-72. 5344/ajev.2016.15077

Zheng, Z., Cai, H. J., Yu, L. Y., & Hoogenboom, G. (2017). Application of the CSM-CERES-Wheat Model for Yield Prediction and Planting Date Evaluation at Guanzhong Plain in Northwest China. Agronomy Journal, 109(1), 204-217. 2134/agronj2016.05.0289

2016 Publications:

Ahmed, M., Akram, M.N.,  Asim, M., Aslam, M., Hassan, F., Higgins, S., Stöckle, C.O. & Hoogenboom, G. (2016). Calibration and validation of APSIM-Wheat and CERES-Wheat for spring wheat under rainfed conditions: models evaluation and application. Computers and Electronics in Agriculture, 123(1), 384-401. doi: 10.1016/j.compag.2016.03.015

Allard, J., P. Vincent, J.R. McElwaney, & Hoogenboom, G. (2016). A comparison of temperature data from automated and manual observing networks in Georgia and impacts of siting characteristics. Journal of Atmospheric and Oceanic Technology 33(7), 1473-1494. doi: 10.1175/JTECH-D-15-0161.1

Anderson, J. L. (Oct. 10, 2016). Global shrimp production survey: GOAL 2016 – production could reach 4.44 MMT by 2018. Global Aquaculture Advocate.

Anderson, J. L., Valderrama, D. & Jory, D. (Jan. 4, 2016). “GOAL shrimp production survey: recovery coming. Global Aquaculture Advocate.

Asche, F., Roll, K. H., & Tveteras, R. (2016) Profiting from agglomeration? Evidence from the salmon aquaculture industry. Regional Studies. 50(10), 1742-1754. doi: 10.1080/00343404.2015.1055460

Asche, F., Misund, B. & & Oglend, A. (2016). Determinants of the Atlantic salmon future risk premium. Journal of Commodity Markets, 2(1), 6-17. doi: 10.1016/j.jcomm.2016.07.001

Asche, F., Misund, B. & Oglend, A. (2016). The spot-forward relationship in the Atlantic salmon market. Aquaculture Economics and Management, 20(2), 222-234. doi: 10.1080/13657305.2016.1156192

Asche, F., & Oglend, A. (2016). The Relationship between input-factor and output prices in commodity industries: the case of Norwegian salmon aquaculture. Journal of Commodity Markets, 1(1), 35-47. doi: 10.1016/j.jcomm.2015.11.001

Aspinall, W. P., Cooke, R. M., Havelaar, A. H., Hoffmann, S., & Hald, T. (2016). Evaluation of a performance-based expert elicitation: WHO global attribution of foodborne diseases. PLoS ONE 11(3), e0149817. doi: 10.1371/journal.pone.0149817 

Badr, G., Klein, L.J., Freitag, M., Albrech, C. M., Marianno, F. J., Lu, S., Shao, X., Hinds, N., Hoogenboom, G., & Hamann, H. F. (2016). Toward large-scale crop production forecasts for global food security. IBM Research & Development 60(5/6), 5-1 – 5:11. doi: 10.1147/JRD.2016.2591698

Barrett, C. B., & Palm, C. A. (2016). Meeting the global food security challenge: obstacles and opportunities ahead. Global Food Security 11, 1-4. doi: 10.1016/j.gfs.2016.11.001

Bronnmann, J. & Asche, F. (2016). The values of product attributes, brands and private labels: an analysis of frozen seafood in Germany. Journal of Agricultural Economics, 67(1), 231-244. doi: 10.1111/1477-9552.12138

Cassini, A., Hathaway, S., Havelaar, A., Koopmans, M., Koutsoumanis, K., Messens, W., Muller-Seitz, G., Nørrung, B., Rizzi, V. & Scheutz, F. (2016). Microbiological risk assessment. EFSA Journal 14(S1), s0507. doi: 10.2903/j.efsa.2016.s0507

Dokoohaki, H., Gheysari, M., Mousavi, S. F., Zand-Parsa, S., Miguez, F. E., Archontoulis, S. V., & Hoogenboom, G. (2016). Coupling and testing a new soil water module in DSSAT CERES-Maize model for maize production under semi-arid condition. Agricultural Water Management 163(1), 90-99. doi: 10.1016/j.agwat.2015.09.002

Dendy, S. P., Tong, B., Alexander H. A., Fay, P. A., Murray, L., Xing, Y. & Garrett, K. A. (2017). A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology. Accepted Author Manuscript. doi: 10.1111/ppa.12678

Faria, de R. T., Casão Jr., R., Werner, S. S., Zanão Jr., L. A., & Hoogenboom, G. (2016). Soybean yield in relation to distance from the Itaipu reservoir. International Journal of Biometeorology 60(7), 1015-1028. doi: 10.1007/s00484-015-1093-8

Fleisher, D. H., Condori, B., Quiroz, R., Alva, A., Asseng, S., Barreda, C., Bindi, M., Boote, K. J., Ferrise, R.,  Franke, A. C., Govindakrishnan, P. M., Harahagazwe, D., Hoogenboom, G., Naresh Kumar, S., Merante, P., Nendel, C.,  Olesen, J. E., Parker, P. S., Raes, D., Raymundo, R., Ruane, A. C., Stockle, C., Supit, I., Vanuytrecht, E., Wolf, J., & Woli, P. (2016). A potato model inter-comparison across varying climates and productivity levels. Global Change Biology. Accepted for publication. doi: 10.1111/gcb.13411

Franssen F., Swart, A., van der Giessen, J., Havelaar, A. & Takumi, K. (2017). Parasite to patient: a quantitative risk model for Trichinella spp. in pork and wild boar meat. Int J Food Microbiol. 241, 262-275. doi: 10.1016/j.ijfoodmicro.2016.10.029.

Gibb, H., Devleesschauwer, B., Bolger, P. M., Wu, F., Ezendam, J., Cliff, J., Zeilmaker, M., Verger, P., Pitt, J., Baines, J., Adegoke, G., Afshari, R., Liu, Y., Bokkers, B., Van Loveren, H., Mengelers, M., Brandon, E., Havelaar, A. H., & Bellinger, D. C. (2016). Asian implications of Aflatoxin and Dioxin foodborne chemical exposures based on World Health Organization estimates. Asia Pacific J Med Tox, 4, 130-132. doi: 10.12688/f1000research.7340.1

Garrett, K. A., Frank, E. E., Dendy, S. P., Leslie, J. F., & Saleh, A. (2016). Microbiome engineers: grazers, browsers, and the phytobiome stampede. bioRxiv, 087494. doi: 10.1101/087494.

Hald, T., Aspinall, W., Devleesschauwer, B., Cooke, R., Corrigan, T., Havelaar, A. H., Gibb, H., Torgerson, P. R., Kirk, M. D., Angulo, F. J., Lake, R. J., Speybroeck, N., & Hoffmann, S. (2016). World Health Organization estimates of the relative contributions of food to the burden of disease due to selected foodborne hazards: a structured expert elicitation. PLOS One, 11, e0145839. doi: 10.1371/ journal.pone.0145839.

Han, Y., Chu, J. & Anderson, J. L. (Aug. 12, 2016). Survey: food safety becoming Chinese consumers’ top priority. Global Aquaculture Advocate.

Havelaar, A. H., & Swart, A. (2016). Impact of waning acquired immunity and asymptomatic infections on case-control studies for enteric pathogens. Epidemics, 17: 56-63. doi: 10.1016/j.epidem.2016.11.004.

Hondrade, R. F., Hondrade, E., Zheng, L., Elazegui, F., Duque, J., Mundt, C. C., Vera Cruz, C. M., & Garrett, K. A. (2017). Cropping system diversification for food production in Mindanao rubber plantations: A rice cultivar mixture and rice intercropped with mungbean. PeerJ 5, e2975 doi: 10.7717/peerj.2975

Jing, Q., Shang, J., Qian, B., Hoogenboom, G., Huffman, T., Liu, J., Ma, B., Geng, X., Jiao, X., Kovacs, J., & Walters, D. (2016). Evaluation of the CSM-CROPGRO-Canola model for simulating canola growth and yield at West Nipissing in eastern Canada. Agronomy Journal, 108(2): 575-584. doi: 10.2134/agronj2015.0401

Kanter, D. R., Musumba, M., Wood, S. L. R., Palm, C., Antle, J., Balvanera, P., Dale, V. H., Havlik, P., Kline, K. L., Scholes, R. J., Thornton, P., Tittonell, P., & Andelman, S. (2016). Evaluating agricultural trade-offs in the age of sustainable development. Agricultural Systems. doi: 10.1016/j.agsy.2016.09.010

Kiani, M., Gheysari, M., Mostafazadeh-Fard, B., Majidi, M. M., Karchani, K., & Hoogenboom, G. (2016). Effect of the interaction of water and nitrogen on sunflower under drip irrigation in an arid region. Agricultural Water Management, 171(1): 162-172. doi: 10.1016/j.agwat.2016.04.008

Kuehne A., Bouwknegt, M., Havelaar, A., Gilsdorf, A., Hoyer, P., Stark, K., Werber, D. & the HUS active surveillance network Germany (2016). Estimating true incidence of O157 and non-O157 Shiga toxin-producing Escherichia coli illness in Germany based on notification data of haemolytic uraemic syndrome. Epidemiol Infect., 144(15), 3305-3315. doi:  10.1017/S0950268816001436

Kumbhakar, S. C., Asche, F., Roll, K., & Tveteras, R. (2016). A general error revenue function model with technical inefficiency: an application to Norwegian fishing trawlers. In Productivity and Efficiency Analysis (ed. W. Greene, L. Khalaf, R. Sickles, M. Veall, M-C. Voia). Springer, Berlin, pp. 51-70.

Liu, P., Lien, K., & Asche, F. (2016). The impact of media coverage and demographics on the demand for Norwegian salmon. Aquaculture Economics and Management, 20(4), 342-356.  doi: 10.1080/13657305.2016.1212126

Liu, B., Asseng, S., Müller, C., Ewert, F., Elliott, J., Lobell, D. , Martre, P., Ruane, A., Wallach, D., Jones, J. W., Rosenzweig, C., Aggarwal, P., Alderman, P., Anothai, J., Basso, B., Biernath, C., Cammarano, D., Challinor, A., Deryng, D., De Sanctis, G., Doltra, J., Fereres, E., C. Folberth, Garcia-Vila, M., Gayler, S., Hoogenboom, G., Hunt, L., Izaurralde, R., Jabloun, M., Jones, C., Kersebaum, K., Kimball, B., Koehler, A., Kumar, S. N., Nendel, C., O'Leary, G., Olesen, J., Ottman, M., Palosuo, T., Prasad, P., Priesack, E., Pugh, T., Reynolds, M., Rezaei, E., Rötter, R. P., Schmid, E., Semenov, M., Shcherbak, I., Stehfest, E., Stöckle, C., Stratonovitch, P., Streck, T., Supit, I., Tao, F., Thorburn, P., Waha, K., Wall, G., Wang, E., White, J. W., Wolf, J., Zhao, Z., & Zhu, Y. (2016). Similar estimates of temperature impacts on global wheat yield by three independent methods. Nature Climate Change, 6, 1130-1136. doi: 10.1038/nclimate3115

Maertens De Noordhout C., Devleesschauwer, B., Maertens De Noordhout, A., Blocher, J., Haagsma, J. A., Havelaar, A. H. & Speybroeck, N. (2016). Comorbidities and factors associated with central nervous system infections and death in non-perinatal listeriosis: a clinical case series. BMC Infect Dis, 16, 256. doi: 10.1186/s12879-016-1602-3.                                       

Mangen M. J. J., Havelaar, A. H., Haagsma, J. A., & Kretzschmar, M. E. E. (2016). The burden of Campylobacter-associated disease in six European countries. Microbial Risk Analysis, 2–3, 48-52. doi: 10.1016/j.mran.2016.04.001

Misund, B. & Asche, F. (2016). Hedging efficiency of Atlantic salmon futures. Aquaculture Economics and Management, 20(4), 368-381. doi: 10.1080/13657305.2016.1212123

Nasim, W., Ahmad, A., Belhouchette, H., Fahad, S., & Hoogenboom, G. (2016). Evaluation of the OILCROP-SUN model for sunflower hybrids under different agro-meteorological conditions of Punjab-Pakistan. Field Crops Research, 188(1), 17-30. doi: 10.1016/j.fcr.2016.01.011

Nasim, W., H. Belhouchette, Ahmad, A., Habib-ur-Rahman, M., Jabran, K., Ullah, K., Fahad, S., Shakeel, M. & Hoogenboom, G. (2016). Modelling climate change impacts and adaptation strategies for sunflower in Punjab-Pakistan. Outlook, 45(1), 39-45. doi: 10.5367/oa.2015.0226

Nasim, W., A. Ahmad, S. Ahmad, M. Nadeem, N. Masood, M. Shahid, M. Mubeen, and G. Hoogenboom (2016). Response of sunflower (Helianthus annuus L.) to nitrogen application grown under different agro-environments. Journal of Plant Nutrition, 10(1), 82-92. doi: 10.1080/01904167.2016.1201492

Nouri, M., Homaee, M., Bannayan, M., & Hoogenboom, G. (2016). Towards modeling soil texture-specific sensitivity of wheat yield and water balance to climatic changes. Agricultural Water Management, 177(1), 248-263. doi: 10.1016/j.agwat.2016.07.025

Oglend, A. and Asche, F. (2016). Cyclical Non-stationarity in Commodity Prices. Empirical Economics, 51(4), 1465-1479. doi: 10.1007/s00181-015-1060-6

Pacholewicz E., Lipman, L. J., Swart, A., Havelaar, A. H., & Heemskerk, W. J. (2016). Pre-scald brushing for removal of solids and associated broiler carcass bacterial contamination. Poult. Sci. 95(12), 2979-2985. doi: 10.3382/ps/pew257

Pacholewicz E., Swart, A., Wagenaar, J., Lipman, L. J., & Havelaar, A. H. (2016). Explanatory variables associated with Campylobacter and Escherichia coli concentrations on broiler chicken carcasses during processing in two slaughterhouses. Journal of Food Protection, 79(12), 2038-2047.             

Pacholewicz E., Barus, S. A. S., Swart, A., Havelaar, A. H., Lipman, L. J. A., & Luning, P. A. (2016). Influence of food handlers' compliance with procedures of poultry carcasses contamination: a case study concerning evisceration in broiler slaughterhouses. Food Control, 68, 367-378. doi: 10.1016/j.foodcont.2016.04.009

Pincinato, R. B. M. & Asche, F. (2016). The development of Brazilian Aquaculture: introduced and Native Species. Aquaculture Economics and Management, 20(3), 312-323. doi: 10.1080/13657305.2016.1177862

Pincinato, R. &  Asche, F. (2016). Market integration in Brazilian shrimp markets. Aquaculture Economics and Management, 20(4), 357-367. doi: 10.1080/13657305.2016.1212124

Poudel, R., Jumpponen, A., Schlatter, D. C., Paulitz, T. C., McSpadden Gardener, B. B., Kinkel, L. L. & Garrett, K. A. (2016). Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology, 106, 1083-1096. doi: 10.1094/PHYTO-02-16-0058-FI

Rahman, M. H. ur, Ahmad, A., Wajid, A., Hussain, M., Akhtar, J., & Hoogenboom, G. (2016). Estimation of temporal variation resilience in cotton varieties using statistical models. Pakistan Journal of Agricultural Sciences, 53(4), 787-807.

Saberali, S. F., Modarres-Sanavy, S. A. M., Bannayan, M., Aghaalikhani, M., Haghayegh, G. & Hoogenboom, G. (2016). Common bean canopy characteristics and N assimilation as affected by weed pressure and nitrogen rate. The Journal of Agricultural Science, 154(4), 598-611. doi: 10.1017/S0021859615000477

Salazar, M., Chaves, B. & Hoogenboom, G. (2016). Freezing tolerance of apple flower buds. Scientia Horticulturae, 198(1): 344-351. doi: 10.1016/j.scienta.2015.12.003

Sanatkar, M. R., White, W. N., Natarajan, B., Scoglio, C. and Garrett, K. A. (2016). Epidemic threshold of an SIS model in dynamic switching networks. IEEE Transactions on Systems, Man, and Cybernetics, 46 (3): 345-355. doi: 10.1109/TSMC.2015.2448061

Thomas‐Sharma, S., Abdurahman, A., Ali, S., Andrade‐Piedra, J., Bao, S., Charkowski, A., Crook, D., Kadian, M., Kromann, P., Struik, P., Torrance, L., Garrett, K. A., & Forbes, G. A. (2016). Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology, 65(1): 3-16. doi: 10.1111/ppa.12439

Van Leuken, J. P. G., Swart, A. N., Havelaar, A. H., Van Pul, A., Van der Hoek, W., & Heederik, D. (2016). Atmospheric dispersion modelling of bioaerosols that are pathogenic to humans and livestock – a review to inform risk assessment studies. Microbial Risk Analysis 1, 19-39. doi: 10.1016/j.mran.2015.07.002

Van Leuken, J., Swart, A., Brandsma, J., Terink, W., Van de Kassteele, J., Droogers, P., Sauter, F., Havelaar A. H., Van der Hoek, W. (2016). Human Q fever incidence is associated to spatiotemporal environmental conditions. One Health 2, 77-87. doi: 10.1016/j.onehlt.2016.03.004.

Van Leuken  J. P. G., A. N. Swart, Droogers, P., van Pul, A., D. Heederik, D., & Havelaar, A. H. (2016). Climate change effects on airborne pathogenic bioaerosol concentrations: a scenario analysis. Aerobiologia, 32, 607. doi: 10.1007/s10453-016-9435-5                       

van Lier, A., McDonald, S. A., Bouwknegt, M., EPI group, Kretzschmar, M. E., Havelaar, A. H., Mangen, M.-J. J. , Wallinga, J., De Melker, H. (2016). Disease burden of 32 infectious diseases in the Netherlands, 2007-2011. PLoS ONE 11(4): e0153106. doi:10.1371/journal.pone.0153106

Woli, P., Hoogenboom, G., & Alva, A. (2016). Simulation of potato yield, nitrate leaching, and profit margins as influenced by irrigation and nitrogen management in different soils and production regions. Agricultural Water Management, 171(1), 120-130. doi: 10.1016/j.agwat.2016.04.003

World Health Organization, Foodborne Epidemiology Reference Group, Source Attribution Task Force (2016). Research synthesis methods in an age of globalized risks: lessons from the Global Burden of Foodborne Disease Expert Elicitation. Risk Anal, 36, 191–202. doi:10.1111/risa.12385.

Zapata, D., Salazar, M., Chaves, B., Keller, M., & Hoogenboom, G. (2017). Predicting key phenological stages for 17 grapevine cultivars (Vitis vinifera L.). American Journal of Enology and Viticulture 68, 60-72. doi: 10.5344/ajev.2016.15077

Zheng, Z., Cai, H., Yu, L., & Hoogenboom, G. (2017). Application of the CSM-CERES-Wheat model for yield prediction and planting date evaluation at Guanzhong Plain in Northwest China. Agronomy Journal, 109(1), 204-217. doi:10.2134/agronj2016.05.0289

Zheng, Z., Cai, H., Chaves, B., Yu, L., & Hoogenboom, G. (2016). Limited irrigation for improving water use efficiency of winter wheat in the Guanzhong plain of northwest China. Transactions of American Society of Agricultural and Biological Engineers, 59(6), 1841-1852.  doi: 10.13031/trans.59.11810

Publications 2015

Anderson, J. L., Anderson, C. M., Chu, J., Merethid, J., et al. (2015) The Fishery Performance Indicators: A Management Tool for Triple Bottom Line Outcomes. PLOS ONE 10(5): e0122809. doi:10.1371/journal.pone.0122809

Anderson, J.L., Valderrama, D., & Jory, D.  (Jan. 4, 2016). GOAL Shrimp Production Survey: Recovery Coming.

Anderson, J.L., Valderrama, D., & Jory, D. (Nov/ Dec 2015). Global Shrimp Production Review: Industry Projects Steady Recovery Following Disease Impacts” Global Aquaculture Advocate, 9-10.

Sampson, G.S., Sanchirico, J. N., M., Roheim, C., Bush, S., Taylor, J. E., E.H. Allison, E. H., Anderson J. L., Ban, N. C., Fujita, R., Jupiter, S., & Wilson, J. R. (2015). Secure Sustainable Seafood from Developing Countries. Science, 348 (6234), 504-506. doi: 10.1126/science.aaa4639

Kobayashi, M., Msangi, S., Batka, M., Vannuccini, S., & Anderson, J. L. (2015). Fish 2030: The Role and Opportunity for Aquaculture. Aquaculture Economics and Management 19, 1-20.